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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs60949145 chr19:23576503 C/CA 1.05E-6 402 15.25 15.7 7.8 KM Plot
LGG rs6100437 chr20:37252018 G/A 1.51E-7 407 15.73 14.43 6.83 KM Plot
LGG rs61054716 chr5:92801386 G/GT 1.45E-5 405 14.92 17.07 18.57 KM Plot
LGG rs61100438 chr12:102295834 G/A 2.08E-5 404 14.4 19.03 20.9 KM Plot
LGG rs61108657 chr12:102247509 C/T 1.49E-5 397 14.43 19.17 5.4 KM Plot
LGG rs61134285 chr12:102305523 AT/A 0.000191 399 14.45 19 6.63 KM Plot
LGG rs61137292 chr9:123670680 CTCTTCA/C 0.000143 407 15.18 15.55 6.63 KM Plot
LGG rs61160043 chr9:94620205 G/C 6.75E-5 406 15.18 16.62 17.55 KM Plot
LGG rs61195139 chr6:36046226 A/C 1.03E-9 405 15.57 15.18 6.15 KM Plot
LGG rs61212706 chr6:36039431 G/T 1.08E-9 405 15.63 15.15 6.15 KM Plot
LGG rs61244394 chr7:64935961 T/C 9.18E-8 400 15.57 15.2 2.27 KM Plot
LGG rs61285615 chr20:48469407 A/G 7.95E-9 407 15.72 10.6 6.83 KM Plot
LGG rs61286004 chr2:86877960 A/G 0 404 15.9 13.23 6.38 KM Plot
LGG rs61327377 chr4:108953281 CTCTTT/C 3.41E-5 407 4.35 15.03 15.57 KM Plot
LGG rs6133524 chr20:7992804 C/T 4.75E-9 407 15.3 17.78 3.38 KM Plot